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Fig. 2 | BMC Infectious Diseases

Fig. 2

From: Characteristics and genomic epidemiology of colistin-resistant Enterobacterales from farmers, swine, and hospitalized patients in Thailand, 2014–2017

Fig. 2

Phylogenetic analysis ofK. pneumoniaeisolates from hospitalized patients and healthy swine in Thailand. Maximum-likelihood phylogeny tree inferred from (a) 69,435 recombinant-filtered core SNPs of K. pneumoniae genomes from Thailand analyzed in this study (n = 11), using K. pneumoniae KPCTRSRTH02 as the reference. (b) 109,250 recombinant-filtered core SNPs of 117 colistin-resistant K. pneumoniae genomes identified in the GenBank database, using K. pneumoniae MLST-15 (CP022125-CP022128) as the reference. Midpoint rooted and branch lengths were ignored. The ST (only for isolates from Thailand), host, isolation year, and geographical origin of the isolates are displayed, where information was not available, or the gene was not present, it was left blank. The presence of colistin-resistance mcr genes is indicated by a star symbol. Thailand isolates from this study are indicated in bold. Numbers at nodes represent < 90% bootstrap support

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BMC Infectious Diseases

ISSN: 1471-2334

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